.. _readme-omnipath: =========================== Using Chapel with Omni-Path =========================== This document describes how to run Chapel across multiple nodes of an Intel Omni-Path cluster. :ref:`readme-multilocale` describes general information about running Chapel in a multilocale configuration. .. note:: Only ``CHPL_COMM=gasnet`` with the ofi substrate is supported for Omni-Path. ``CHPL_COMM=ofi`` is not supported. .. contents:: ------------------------- Configuring for Omni-Path ------------------------- To build Chapel with Omni-Path support, set: .. code-block:: bash export CHPL_COMM=gasnet export CHPL_COMM_SUBSTRATE=ofi GASNet should automatically detect the ``psm2`` provider, but to ensure this provider is used ``FI_PROVIDER=psm2`` may optionally be set. ---------------------- Configuring a Launcher ---------------------- A ``gasnetrun_ofi``-based launcher should be used to launch jobs and native launchers like ``srun`` will not work. Many Omni-Path clusters use a workload manager or queueing system such as Slurm. To select an appropriate Chapel launcher you can set ``CHPL_LAUNCHER`` to one of the following values: =================== ====================================== Launcher Name Description =================== ====================================== gasnetrun_ofi run jobs interactively on your system slurm-gasnetrun_ofi queue jobs using Slurm (srun/sbatch) =================== ====================================== .. _setting-ofi-spawner: ------------------- Selecting a Spawner ------------------- Under the covers ``gasnetrun_ofi``-based launchers must figure out how to spawn jobs and get them up and running on the compute nodes. GASNet's two primary means of doing this on Omni-Path clusters are ``ssh`` and ``mpi``. GASNet will default to ``mpi`` if MPI support is detected at configure time, otherwise it will default to ``ssh``. Using ``mpi`` will likely incur a performance penalty because MPI will be running concurrently with GASNet. Running with ``ssh`` is recommended, but not all systems support ssh'ing to compute nodes so it is not always the default. Using SSH for Job Launch ------------------------ To launch Omni-Path jobs with SSH, use the following: .. code-block:: bash # Specify ssh spawner export GASNET_OFI_SPAWNER=ssh # Specify the nodes to run on (only required when using plain # gasnetrun_ofi outside a Slurm reservation) export GASNET_SSH_SERVERS="nid00001 nid00002 nid00003 ..." If you receive an error message like: .. code-block:: printoutput *** Failed to start processes on nid00001, possibly due to an inability to establish an ssh connection from login-node without interactive authentication. This indicates passwordless SSH is not set up. You can try copying existing SSH keys or generating new ones with the following: .. code-block:: bash ssh-keygen -t rsa # use default location and empty passphrase cat ~/.ssh/id_rsa.pub >> ~/.ssh/authorized_keys If you see the same error message this may indicate ssh connections to compute nodes are not allowed, in which case using the MPI spawner may be your only option. Using MPI for Job Launch ------------------------ To launch Omni-Path jobs with *mpirun*, first make sure that *mpicc* is available and that MPI programs launch appropriately with *mpirun*. Then use the following. You'll want to make sure that GASNet detects MPI in its configuration output. .. code-block:: bash export GASNET_OFI_SPAWNER=mpi It's worth noting that some configurations do not allow opening the network device multiple times from a single process, so this method may not be reliable. -------------------- Verifying Job Launch -------------------- Once the above configuration has been done, checking that jobs are launching properly is recommended. The following Chapel program will print out the locale names and how much parallelism is available per locale. Ideally each locale is running on a unique node (not oversubscribed) and the amount of parallelism matches the number of physical cores on each node. .. code-block:: chapel for loc in Locales do on loc do writeln((here.name, here.maxTaskPar)); An example run may look something like the following: .. code-block:: printoutput (nid00001, 28) (nid00002, 28) If nodes are oversubscribed or the amount of parallelism is far less than expected see :ref:`setting-ofi-spawner` and if that does not help consider opening a bug as described in :ref:`readme-bugs`. In some cases, we have found that setting ``HFI_NO_CPUAFFINITY=1`` may be required to get access to all cores. -------- See Also -------- For more information on these and other available GASNet options, including configuring to launch through MPI, please refer to GASNet's official `ofi conduit documentation `_, which can also be found in ``$CHPL_HOME/third-party/gasnet/gasnet-src/ofi-conduit/README``.